sequence alignment
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BioEdit

28  
Developer Tom Hall

An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on ...

clustalx

5  
Developer European Bioinformatics Institute

Clustal X is a windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for ...

MEGA

13  
Developer Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S

MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining ...

Cn3D

4  
Developer NCBI

Cn3D (to be read "see in 3D") is an application offered as support for web browsers so that one can ...

Geneious

 
Developer Biomatters Ltd.

Geneious is a research tool designed for biologists and not computer scientists. Main features: - Drag and drop to ...

Vector NTI Advance

6  
Developer Invitrogen Corporation

Vector NTI Advance is a program that offers unparalleled, multi-modular, integrated sequence analysis and data management tools. It provides ...

ClustalW2

 
Developer University College Dublin

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces ...

Jalview

 
Developer The Barton Group

Jalview is a free program for multiple sequence alignment editing, visualization and analysis. You can use it to view and edit ...

Unipro UGENE

 
Developer Unipro, Russia

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. ...

DAMBE

3  
Developer XiaLab

DAMBE is an integrated software package for converting, manipulating, statistically and graphically describing, and analyzing ...

EZEditor

 
Developer Chunlab Inc.

EzEditor is a Java-based sequence alignment editor allowing manipulation of both DNA and protein sequence ...

Schrodinger Prime

 
Developer Schrodinger LLC

Schrodinger Prime is a powerful and innovative package for accurate protein structure predictions. It provides ...

BSqAn

 
Developer Arun Jagota / Jim Serwer

BioSeqAnalyzer is a tool for BioInformatics sequence analysis. Supports the following Sequence Analysis operations: - Scoring an ...

BSEdit

 
Developer BSEdit

BSEdit is a WYSIWYG and efficient multiple sequence alignment editor. It can handle multiple alignments ...

SamTools

 
Developer Tunnel Vision Labs

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM ...