sequence alignment
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BioEdit

16  
Developer Tom Hall

An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on ...

clustalx

4  
Developer European Bioinformatics Institute

Clustal X is a windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for ...

MEGA

7  
Developer Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S

MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining ...

Cn3D

4  
Developer NCBI

Cn3D (to be read "see in 3D") is an application offered as support for web browsers so that one can ...

Geneious

 
Developer Biomatters Ltd.

Geneious is a research tool designed for biologists and not computer scientists. Main features: - Drag and drop to ...

Vector NTI Advance

3  
Developer Invitrogen Corporation

Vector NTI Advance is a program that offers unparalleled, multi-modular, integrated sequence analysis and data management tools. It provides ...

ClustalW2

 
Developer University College Dublin

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces ...

Jalview

 
Developer The Barton Group

Jalview is a free program for multiple sequence alignment editing, visualization and analysis. You can use it to view and edit ...

Unipro UGENE

 
Developer Unipro, Russia

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. ...

DAMBE

1  
Developer Xuhua Xia

DAMBE is a versatile software workbench for laboratories doing research in molecular biology and evolution. Features: Sequence ...

EZEditor

 
Developer Chunlab Inc.

EzEditor is a Java-based sequence alignment editor allowing manipulation of both DNA and protein sequence ...

Schrodinger Prime

 
Developer Schrodinger LLC

Schrodinger Prime is a powerful and innovative package for accurate protein structure predictions. It provides ...

BSEdit

 
Developer BSEdit

BSEdit is a WYSIWYG and efficient multiple sequence alignment editor. It can handle multiple alignments ...

SamTools

 
Developer Tunnel Vision Labs

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM ...

BSqAn

 
Developer Arun Jagota / Jim Serwer

BioSeqAnalyzer is a tool for BioInformatics sequence analysis. Supports the following Sequence Analysis operations: - Scoring an ...